STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0114Putative Phage tail length tape measure protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. (901 aa)    
Predicted Functional Partners:
NIDE0117
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
 
     0.937
NIDE0106
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
 
   0.909
NIDE0121
Homologs of previously reported genes of unknown function.
 
  
 0.906
NIDE0122
Homologs of previously reported genes of unknown function.
 
     0.846
NIDE0097
Homologs of previously reported genes of unknown function.
 
     0.815
NIDE0099
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function; extrachromosomal origin.
 
     0.795
NIDE0113
Homologs of previously reported genes of unknown function.
       0.789
NIDE0107
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
 
     0.785
NIDE0105
Putative Phage minor capsid protein C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
    0.768
NIDE0115
Homologs of previously reported genes of unknown function.
       0.734
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.