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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0122Homologs of previously reported genes of unknown function. (102 aa)    
Predicted Functional Partners:
NIDE0121
Homologs of previously reported genes of unknown function.
 
     0.901
NIDE0117
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
 
     0.857
NIDE0114
Putative Phage tail length tape measure protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
     0.845
NIDE0099
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function; extrachromosomal origin.
 
     0.827
NIDE0106
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
 
     0.823
NIDE0107
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
 
     0.818
NIDE0100
Phage terminase, large subunit; Function of strongly homologous gene; extrachromosomal origin.
 
     0.812
NIDE0104
Phage portal protein, lambda family; Function of strongly homologous gene; extrachromosomal origin.
 
     0.812
NIDE0097
Homologs of previously reported genes of unknown function.
 
     0.807
NIDE0125
Homologs of previously reported genes of unknown function.
       0.795
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.