Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NIDE0124Phage lysozyme; Function of strongly homologous gene; enzyme. (166 aa)    
Predicted Functional Partners:
NIDE0122
Homologs of previously reported genes of unknown function.
       0.786
NIDE0125
Homologs of previously reported genes of unknown function.
       0.781
NIDE0123
Protein of unknown function; No homology to any previously reported sequences.
       0.773
NIDE1980
Protein of unknown function, putative Lysozyme; No homology to any previously reported sequences; 7624375, 8535779.
  
     0.771
NIDE0121
Homologs of previously reported genes of unknown function.
     
 0.641
NIDE0120
Homologs of previously reported genes of unknown function.
       0.600
NIDE0119
Homologs of previously reported genes of unknown function.
       0.586
NIDE0104
Phage portal protein, lambda family; Function of strongly homologous gene; extrachromosomal origin.
 
   
 0.446
NIDE0100
Phage terminase, large subunit; Function of strongly homologous gene; extrachromosomal origin.
 
   
 0.437
NIDE1987
Conserved protein of unknown function, Rhs element Vgr protein family; Homologs of previously reported genes of unknown function; 16763151, 9696756, 19284603.
  
  
 0.408
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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