Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0131Homologs of previously reported genes of unknown function; 8440408, 9759493. (1040 aa)    
Predicted Functional Partners:
NIDE0128
Putative DEAD/DEAH box helicase, SNF2 family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.953
NIDE0129
Putative DNA methylase, containing Zn-ribbon; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.953
NIDE0130
Homologs of previously reported genes of unknown function.
       0.802
NIDE0132
Homologs of previously reported genes of unknown function; 9714164, 9857196.
       0.788
NIDE1812
Homologs of previously reported genes of unknown function.
  
     0.688
NIDE2627
Homologs of previously reported genes of unknown function.
  
     0.561
NIDE2604
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
  
     0.462
NIDE0285
Conserved protein of unknown function, DUF132; Homologs of previously reported genes of unknown function.
  
     0.453
NIDE0127
Homologs of previously reported genes of unknown function.
       0.452
NIDE0126
Homologs of previously reported genes of unknown function.
       0.414
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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