Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0132Homologs of previously reported genes of unknown function; 9714164, 9857196. (64 aa)    
Predicted Functional Partners:
NIDE0131
Homologs of previously reported genes of unknown function; 8440408, 9759493.
       0.788
NIDE0130
Homologs of previously reported genes of unknown function.
       0.786
NIDE0128
Putative DEAD/DEAH box helicase, SNF2 family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.785
NIDE0129
Putative DNA methylase, containing Zn-ribbon; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.785
NIDE1252
Homologs of previously reported genes of unknown function.
  
  
 0.602
hflK
FtsH protease activity modulator HflK; HflC and HflK could encode or regulate a protease.
  
  
 0.602
hflC
FtsH protease activity modulator HflC; HflC and HflK could regulate a protease.
  
  
 0.602
qmcA
Putative Protease QmcA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.602
NIDE0127
Homologs of previously reported genes of unknown function.
       0.452
NIDE0126
Homologs of previously reported genes of unknown function.
       0.414
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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