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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
otsA1Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (743 aa)    
Predicted Functional Partners:
otsB
Trehalose phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
 
 0.999
NIDE3904
Glycosyl transferase, group 1; Function of strongly homologous gene; enzyme.
 
  
  0.925
galU
UTP--glucose-1-phosphate uridylyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.919
NIDE0143
Glycoside hydrolase, family 15; Function of strongly homologous gene; enzyme.
 
   
 0.913
otsA2
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 
0.910
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
     
 0.829
rfbF
Glucose-1-phosphate cytidylyltransferase; Function of strongly homologous gene; enzyme.
     
  0.800
lpsL
UDP-glucuronate 5'-epimerase; Function of strongly homologous gene; enzyme.
     
  0.800
NIDE0142
Protein of unknown function; No homology to any previously reported sequences.
       0.443
NIDE2941
Homologs of previously reported genes of unknown function.
   
    0.440
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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