STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0200Exported protein of unknown function, PDZ domain; No homology to any previously reported sequences; 10887205, 8674113, 9041651, 9204764, 9382826. (160 aa)    
Predicted Functional Partners:
NIDE0201
Protein of unknown function; No homology to any previously reported sequences.
       0.773
yfcH
Conserved protein of unknown function, NAD(P)-binding Rossmann-fold domain; Homologs of previously reported genes of unknown function.
       0.729
NIDE0199
Homologs of previously reported genes of unknown function.
       0.701
phr
Deoxyribodipyrimidine photolyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DNA photolyase family.
       0.692
NIDE0204
Homologs of previously reported genes of unknown function.
       0.692
NIDE0202
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.682
NIDE0197
Protein of unknown function; No homology to any previously reported sequences.
       0.604
pycB
Pyruvate carboxylase, subunit B; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.560
NIDE0196
Exported protein of unknown function; No homology to any previously reported sequences.
       0.535
NIDE2082
Homologs of previously reported genes of unknown function.
    
 
 0.465
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.