STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0201Protein of unknown function; No homology to any previously reported sequences. (174 aa)    
Predicted Functional Partners:
NIDE0200
Exported protein of unknown function, PDZ domain; No homology to any previously reported sequences; 10887205, 8674113, 9041651, 9204764, 9382826.
       0.773
yfcH
Conserved protein of unknown function, NAD(P)-binding Rossmann-fold domain; Homologs of previously reported genes of unknown function.
       0.701
NIDE0199
Homologs of previously reported genes of unknown function.
       0.701
NIDE0204
Homologs of previously reported genes of unknown function.
       0.701
NIDE0202
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.687
phr
Deoxyribodipyrimidine photolyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DNA photolyase family.
       0.640
NIDE0197
Protein of unknown function; No homology to any previously reported sequences.
       0.604
NIDE0196
Exported protein of unknown function; No homology to any previously reported sequences.
       0.534
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.