Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NIDE0207Homologs of previously reported genes of unknown function. (198 aa)    
Predicted Functional Partners:
NIDE0208
Homologs of previously reported genes of unknown function.
 
     0.731
NIDE0210
Putative Flavin-containing amine oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.679
NIDE0211
Conserved protein of unknown function, DUF1365; Homologs of previously reported genes of unknown function.
 
     0.674
NIDE0213
Homologs of previously reported genes of unknown function.
 
     0.662
NIDE0209
Putative Glucose/ribitol dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.648
cfa
Cyclopropane-fatty-acyl-phospholipid synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.641
NIDE0206
Protein of unknown function, CbiX domain; No homology to any previously reported sequences; 11215515, 12055304, 12686546, 12869542, 16042605, 16835730.
       0.580
NIDE0204
Homologs of previously reported genes of unknown function.
     
 0.537
NIDE0205
Homologs of previously reported genes of unknown function.
       0.488
NIDE1528
Conserved protein of unknown function, contains FHA domain; Homologs of previously reported genes of unknown function; 11106755, 11911881, 12564991, 7482699.
  
    0.439
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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