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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0258Protein of unknown function; No homology to any previously reported sequences. (174 aa)    
Predicted Functional Partners:
NIDE0618
BLUF domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
    
   0.815
NIDE0257
Protein of unknown function; No homology to any previously reported sequences.
      
0.680
NIDE2310
Protein of unknown function, contains Diguanylate cyclase domain; No homology to any previously reported sequences; 11682196, 15063857, 15075296, 15306016, 15569936, 15716451, 16418169, 17010156, 7592388.
    
 
 0.680
NIDE4156
Protein of unknown function, contains Diguanylate kinase domain; No homology to any previously reported sequences; 11682196, 15063857, 15306016, 15569936, 15716451.
    
 
 0.680
NIDE0259
Protein of unknown function; No homology to any previously reported sequences.
       0.572
gspE2
General secretion pathway protein E, contains GAF domain; Function of strongly homologous gene; transporter.
    
 
 0.457
gspE
General secretion pathway protein E; Function of strongly homologous gene; transporter.
    
 
 0.457
NIDE4097
Putative Type IV pilus assembly protein PilB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
    
 
 0.457
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.