Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE0266Putative Outer membrane protein, OmpA/MotB family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. (400 aa)    
Predicted Functional Partners:
motA
Flagellar motor protein MotA; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
 
 0.971
NIDE2341
Putative Flagellar capping protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.940
flgK
First flagellar hook-filament junction protein FlgK; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
  
 0.871
NIDE2654
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.864
flgC
Flagellar basal-body rod protein FlgC; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the flagella basal body rod proteins family.
 
  
 0.815
cheV
Chemotaxis signal transducer CheV; Function of strongly homologous gene; regulator.
  
  
 0.800
NIDE2011
Homologs of previously reported genes of unknown function.
  
  
 0.794
NIDE2320
Putative Second flagellar hook-filament junction protein FlgL; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
  
 0.776
fliI
ATPase FliI; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.770
fliC
Flagellin, class B; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.770
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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