| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NIDE0281 | NIDE0853 | NIDE0281 | NIDE0853 | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | Protein of unknown function, TPR-like; No homology to any previously reported sequences. | 0.565 |
| NIDE0281 | NIDE2933 | NIDE0281 | NIDE2933 | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | Putative P-loop guanosine triphosphatase, CobW-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.608 |
| NIDE0281 | dnaX | NIDE0281 | NIDE0278 | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.530 |
| NIDE0281 | greA | NIDE0281 | NIDE2546 | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.505 |
| NIDE0281 | recR | NIDE0281 | NIDE0280 | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.591 |
| NIDE0281 | rpoB | NIDE0281 | NIDE1303 | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.822 |
| NIDE0281 | rpoC | NIDE0281 | NIDE1304 | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.854 |
| NIDE0281 | rpoH | NIDE0281 | NIDE1381 | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | RNA polymerase, sigma 32 (sigma H) factor; Function of homologous gene experimentally demonstrated in an other organism; factor. | 0.569 |
| NIDE0281 | secG | NIDE0281 | NIDE1104 | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | Preprotein translocase, membrane subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.702 |
| NIDE0281 | ybaB | NIDE0281 | NIDE0279 | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | Conserved protein of unknown function, UPF0133; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.536 |
| NIDE0853 | NIDE0281 | NIDE0853 | NIDE0281 | Protein of unknown function, TPR-like; No homology to any previously reported sequences. | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | 0.565 |
| NIDE0853 | secG | NIDE0853 | NIDE1104 | Protein of unknown function, TPR-like; No homology to any previously reported sequences. | Preprotein translocase, membrane subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.446 |
| NIDE2933 | NIDE0281 | NIDE2933 | NIDE0281 | Putative P-loop guanosine triphosphatase, CobW-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | 0.608 |
| dnaX | NIDE0281 | NIDE0278 | NIDE0281 | DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | 0.530 |
| dnaX | recR | NIDE0278 | NIDE0280 | DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.944 |
| dnaX | rpoB | NIDE0278 | NIDE1303 | DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.701 |
| dnaX | ybaB | NIDE0278 | NIDE0279 | DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Conserved protein of unknown function, UPF0133; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.915 |
| greA | NIDE0281 | NIDE2546 | NIDE0281 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Putative RNA polymerase-binding protein DksA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | 0.505 |
| greA | rpoB | NIDE2546 | NIDE1303 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.904 |
| greA | rpoC | NIDE2546 | NIDE1304 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.948 |
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