NIDE0282 protein (Nitrospira defluvii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NIDE0282

Protein of unknown function, TPR-like; No homology to any previously reported sequences. (381 aa)

Predicted Functional Partners:

NIDE3274

0.618

NIDE0283

0.574

NIDE0948

0.552

NIDE3134

0.545

NIDE4395

0.502

NIDE0624

0.486

NIDE1061

0.460

NIDE2108

0.426

Your Current Organism:

Nitrospira defluvii

NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
NIDE0282	NIDE0283	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Exported protein of unknown function; No homology to any previously reported sequences.	0.574
NIDE0282	NIDE0624	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Protein of unknown function, containing TPR repeats; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716.	0.486
NIDE0282	NIDE0948	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 11777911, 14659697, 15223324, 1882418, 7667876, 9482716.	0.552
NIDE0282	NIDE1061	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Conserved protein of unknown function, contains TPR repeats; Homologs of previously reported genes of unknown function.	0.460
NIDE0282	NIDE2108	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 10786835, 14659697, 7667876, 9482716.	0.426
NIDE0282	NIDE3134	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 15451670, 7667876, 9482716.	0.545
NIDE0282	NIDE3274	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Protein of unknown function, contains TPR repeats; No homology to any previously reported sequences; 16893176, 7667876, 9482716.	0.618
NIDE0282	NIDE4395	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 7667876, 9482716.	0.502
NIDE0283	NIDE0282	Exported protein of unknown function; No homology to any previously reported sequences.	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	0.574
NIDE0624	NIDE0282	Protein of unknown function, containing TPR repeats; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716.	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	0.486
NIDE0624	NIDE0948	Protein of unknown function, containing TPR repeats; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716.	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 11777911, 14659697, 15223324, 1882418, 7667876, 9482716.	0.411
NIDE0624	NIDE1061	Protein of unknown function, containing TPR repeats; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716.	Conserved protein of unknown function, contains TPR repeats; Homologs of previously reported genes of unknown function.	0.762
NIDE0624	NIDE4395	Protein of unknown function, containing TPR repeats; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716.	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 7667876, 9482716.	0.401
NIDE0948	NIDE0282	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 11777911, 14659697, 15223324, 1882418, 7667876, 9482716.	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	0.552
NIDE0948	NIDE0624	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 11777911, 14659697, 15223324, 1882418, 7667876, 9482716.	Protein of unknown function, containing TPR repeats; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716.	0.411
NIDE0948	NIDE1061	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 11777911, 14659697, 15223324, 1882418, 7667876, 9482716.	Conserved protein of unknown function, contains TPR repeats; Homologs of previously reported genes of unknown function.	0.764
NIDE0948	NIDE2108	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 11777911, 14659697, 15223324, 1882418, 7667876, 9482716.	Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 10786835, 14659697, 7667876, 9482716.	0.787
NIDE0948	NIDE3274	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 11777911, 14659697, 15223324, 1882418, 7667876, 9482716.	Protein of unknown function, contains TPR repeats; No homology to any previously reported sequences; 16893176, 7667876, 9482716.	0.770
NIDE1061	NIDE0282	Conserved protein of unknown function, contains TPR repeats; Homologs of previously reported genes of unknown function.	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	0.460
NIDE1061	NIDE0624	Conserved protein of unknown function, contains TPR repeats; Homologs of previously reported genes of unknown function.	Protein of unknown function, containing TPR repeats; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716.	0.762