Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NIDE0290 | NIDE0292 | NIDE0290 | NIDE0292 | Protein of unknown function; No homology to any previously reported sequences. | Protein of unknown function; No homology to any previously reported sequences. | 0.498 |
NIDE0292 | NIDE0290 | NIDE0292 | NIDE0290 | Protein of unknown function; No homology to any previously reported sequences. | Protein of unknown function; No homology to any previously reported sequences. | 0.498 |
NIDE0292 | NIDE0293 | NIDE0292 | NIDE0293 | Protein of unknown function; No homology to any previously reported sequences. | Putative DNA-binding domain protein, Excisionase family (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. | 0.673 |
NIDE0292 | int | NIDE0292 | NIDE0294 | Protein of unknown function; No homology to any previously reported sequences. | Phage integrase; Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family. | 0.671 |
NIDE0293 | NIDE0292 | NIDE0293 | NIDE0292 | Putative DNA-binding domain protein, Excisionase family (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. | Protein of unknown function; No homology to any previously reported sequences. | 0.673 |
NIDE0293 | int | NIDE0293 | NIDE0294 | Putative DNA-binding domain protein, Excisionase family (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. | Phage integrase; Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family. | 0.774 |
int | NIDE0292 | NIDE0294 | NIDE0292 | Phage integrase; Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family. | Protein of unknown function; No homology to any previously reported sequences. | 0.671 |
int | NIDE0293 | NIDE0294 | NIDE0293 | Phage integrase; Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family. | Putative DNA-binding domain protein, Excisionase family (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. | 0.774 |