STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmpAPeptidase S58; Function of strongly homologous gene; enzyme. (421 aa)    
Predicted Functional Partners:
NIDE0325
Putative RNA-metabolising metallo-beta-lactamase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.758
NIDE0326
Homologs of previously reported genes of unknown function; Belongs to the LOG family.
  
    0.722
NIDE1440
Putative Muconate cycloisomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.674
NIDE1142
Putative Muconate cycloisomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.671
NIDE1157
Putative Imidazolonepropionase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.542
ddlA
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
      0.530
NIDE0323
Protein of unknown function; No homology to any previously reported sequences.
       0.526
NIDE0327
Exported protein of unknown function; No homology to any previously reported sequences.
       0.524
NIDE0328
Homologs of previously reported genes of unknown function.
       0.524
NIDE0329
N-acetyltransferase, GNAT family; Function of strongly homologous gene; enzyme.
  
    0.466
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.