STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0342Conserved membrane protein of unknown function, Transglutaminase-like; Homologs of previously reported genes of unknown function; 12366374, 9791169. (734 aa)    
Predicted Functional Partners:
NIDE0343
Conserved protein of unknown function, DUF58; Homologs of previously reported genes of unknown function.
  
 0.975
ATPase
ATPase, AAA family; Function of strongly homologous gene; enzyme.
 
  
 0.923
NIDE1350
Putative Type IV pilus biogenesis protein PilO; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.589
pilM
Type IV pilus biogenesis protein PilM; Function of strongly homologous gene; structure.
 
     0.486
NIDE0341
Protein of unknown function; No homology to any previously reported sequences.
       0.444
NIDE0345
Protein of unknown function; No homology to any previously reported sequences.
       0.406
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.