Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ATPaseATPase, AAA family; Function of strongly homologous gene; enzyme. (334 aa)    
Predicted Functional Partners:
NIDE0343
Conserved protein of unknown function, DUF58; Homologs of previously reported genes of unknown function.
 
  
 0.931
NIDE0342
Conserved membrane protein of unknown function, Transglutaminase-like; Homologs of previously reported genes of unknown function; 12366374, 9791169.
 
  
 0.923
NIDE3564
Protein of unknown function, contains von Willebrand factor; No homology to any previously reported sequences; 8440408, 9759493.
  
 
 0.818
phoU
Phosphate transport system protein PhoU; Plays a role in the regulation of phosphate uptake.
   
  
 0.633
pilR
Transcriptional regulatory protein pilR; Function of strongly homologous gene; regulator.
      
 0.627
pstS
Phosphate ABC transporter, periplasmic phosphate-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
      
 0.620
NIDE0345
Protein of unknown function; No homology to any previously reported sequences.
       0.533
flgC
Flagellar basal-body rod protein FlgC; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the flagella basal body rod proteins family.
      
 0.428
cheW
Chemotaxis signal transducer CheW; Function of homologous gene experimentally demonstrated in an other organism; regulator.
      
 0.428
cheW-2
Chemotaxis signal transduction protein CheW; Function of homologous gene experimentally demonstrated in an other organism; regulator.
      
 0.428
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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