NIDE0375 protein (Nitrospira defluvii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NIDE0375

Homologs of previously reported genes of unknown function. (198 aa)

Predicted Functional Partners:

cheV

0.800

NIDE2654

0.678

NIDE3937

0.579

NIDE3313

0.573

NIDE3519

0.568

NIDE1848

0.509

NIDE0805

0.479

NIDE0815

0.479

NIDE0558

0.472

cheA

0.418

Your Current Organism:

Nitrospira defluvii

NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NIDE0375	NIDE0558	NIDE0375	NIDE0558	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.472
NIDE0375	NIDE0805	NIDE0375	NIDE0805	Homologs of previously reported genes of unknown function.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.479
NIDE0375	NIDE0815	NIDE0375	NIDE0815	Homologs of previously reported genes of unknown function.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.479
NIDE0375	NIDE1848	NIDE0375	NIDE1848	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.509
NIDE0375	NIDE2654	NIDE0375	NIDE2654	Homologs of previously reported genes of unknown function.	Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.678
NIDE0375	NIDE3313	NIDE0375	NIDE3313	Homologs of previously reported genes of unknown function.	Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences.	0.573
NIDE0375	NIDE3519	NIDE0375	NIDE3519	Homologs of previously reported genes of unknown function.	Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences; 14572631, 16234932, 16574144, 17227014, 1995346.	0.568
NIDE0375	NIDE3937	NIDE0375	NIDE3937	Homologs of previously reported genes of unknown function.	Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences; 11867755, 14572631, 16234932.	0.579
NIDE0375	cheA	NIDE0375	NIDE2350	Homologs of previously reported genes of unknown function.	Chemotaxis protein histidine kinase CheA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.418
NIDE0375	cheV	NIDE0375	NIDE2351	Homologs of previously reported genes of unknown function.	Chemotaxis signal transducer CheV; Function of strongly homologous gene; regulator.	0.800
NIDE0558	NIDE0375	NIDE0558	NIDE0375	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.472
NIDE0805	NIDE0375	NIDE0805	NIDE0375	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.479
NIDE0805	NIDE0815	NIDE0805	NIDE0815	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.979
NIDE0805	NIDE2654	NIDE0805	NIDE2654	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.987
NIDE0805	cheA	NIDE0805	NIDE2350	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Chemotaxis protein histidine kinase CheA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.646
NIDE0805	cheV	NIDE0805	NIDE2351	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Chemotaxis signal transducer CheV; Function of strongly homologous gene; regulator.	0.963
NIDE0815	NIDE0375	NIDE0815	NIDE0375	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.479
NIDE0815	NIDE0805	NIDE0815	NIDE0805	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.979
NIDE0815	NIDE2654	NIDE0815	NIDE2654	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.987
NIDE0815	cheA	NIDE0815	NIDE2350	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Chemotaxis protein histidine kinase CheA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.646