NIDE0407 protein (Nitrospira defluvii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NIDE0407

Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (847 aa)

Predicted Functional Partners:

cysH

0.999

cysNC

0.999

cysK

0.982

cysD

0.974

cobA/hemD

0.951

NIDE3220

0.946

hemD

0.925

sqr

0.921

NIDE2693

0.912

tauD

0.900

Your Current Organism:

Nitrospira defluvii

NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NIDE0407	NIDE2693	NIDE0407	NIDE2693	Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Putative Alkanesulfonate monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.912
NIDE0407	NIDE3220	NIDE0407	NIDE3220	Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Putative 3-mercaptopyruvate sulfurtransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.946
NIDE0407	cobA/hemD	NIDE0407	NIDE2103	Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Uroporphyrinogen-III C-methyltransferase and Uroporphyrinogen-III synthase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the precorrin methyltransferase family.	0.951
NIDE0407	cysD	NIDE0407	NIDE0410	Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Sulfate adenylyltransferase, subunit 2; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.974
NIDE0407	cysH	NIDE0407	NIDE0408	Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.	0.999
NIDE0407	cysK	NIDE0407	NIDE1821	Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Cysteine synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.982
NIDE0407	cysNC	NIDE0407	NIDE0411	Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Sulfate adenylyltransferase, subunit 1, and adenylylsulfate kinase (bifunctional enzyme); Function of strongly homologous gene; enzyme.	0.999
NIDE0407	hemD	NIDE0407	NIDE2743	Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Porphyrin biosynthesis protein HemD; Function of strongly homologous gene; enzyme.	0.925
NIDE0407	sqr	NIDE0407	NIDE3925	Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Sulfide:quinone oxidoreductase; Function of strongly homologous gene; enzyme.	0.921
NIDE0407	tauD	NIDE0407	NIDE0927	Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Taurine dioxygenase, 2-oxoglutarate-dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.900
NIDE2693	NIDE0407	NIDE2693	NIDE0407	Putative Alkanesulfonate monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.912
NIDE2693	NIDE3220	NIDE2693	NIDE3220	Putative Alkanesulfonate monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative 3-mercaptopyruvate sulfurtransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.900
NIDE2693	cysH	NIDE2693	NIDE0408	Putative Alkanesulfonate monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.	0.902
NIDE2693	tauD	NIDE2693	NIDE0927	Putative Alkanesulfonate monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Taurine dioxygenase, 2-oxoglutarate-dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.959
NIDE3220	NIDE0407	NIDE3220	NIDE0407	Putative 3-mercaptopyruvate sulfurtransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Sulfite reductase, contains SirA-like domain (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.946
NIDE3220	NIDE2693	NIDE3220	NIDE2693	Putative 3-mercaptopyruvate sulfurtransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Alkanesulfonate monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.900
NIDE3220	cysH	NIDE3220	NIDE0408	Putative 3-mercaptopyruvate sulfurtransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.	0.920
NIDE3220	cysK	NIDE3220	NIDE1821	Putative 3-mercaptopyruvate sulfurtransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Cysteine synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.863
NIDE3220	cysNC	NIDE3220	NIDE0411	Putative 3-mercaptopyruvate sulfurtransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Sulfate adenylyltransferase, subunit 1, and adenylylsulfate kinase (bifunctional enzyme); Function of strongly homologous gene; enzyme.	0.511
NIDE3220	tauD	NIDE3220	NIDE0927	Putative 3-mercaptopyruvate sulfurtransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Taurine dioxygenase, 2-oxoglutarate-dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.900

page 1 of 4

Server load: medium (64%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About