NIDE0438 protein (Nitrospira defluvii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NIDE0438

Protein of unknown function; No homology to any previously reported sequences. (97 aa)

Predicted Functional Partners:

NIDE0439

0.655

gdhA

0.613

lipB

0.611

NIDE0442

0.596

Your Current Organism:

Nitrospira defluvii

NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NIDE0438	NIDE0439	NIDE0438	NIDE0439	Protein of unknown function; No homology to any previously reported sequences.	Membrane protein of unknown function; No homology to any previously reported sequences.	0.655
NIDE0438	NIDE0442	NIDE0438	NIDE0442	Protein of unknown function; No homology to any previously reported sequences.	Trypsin-like serine peptidase, S1C; Function of strongly homologous gene; enzyme.	0.596
NIDE0438	gdhA	NIDE0438	NIDE0440	Protein of unknown function; No homology to any previously reported sequences.	Glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.613
NIDE0438	lipB	NIDE0438	NIDE0441	Protein of unknown function; No homology to any previously reported sequences.	Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.	0.611
NIDE0439	NIDE0438	NIDE0439	NIDE0438	Membrane protein of unknown function; No homology to any previously reported sequences.	Protein of unknown function; No homology to any previously reported sequences.	0.655
NIDE0439	NIDE0442	NIDE0439	NIDE0442	Membrane protein of unknown function; No homology to any previously reported sequences.	Trypsin-like serine peptidase, S1C; Function of strongly homologous gene; enzyme.	0.701
NIDE0439	gdhA	NIDE0439	NIDE0440	Membrane protein of unknown function; No homology to any previously reported sequences.	Glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.701
NIDE0439	lipB	NIDE0439	NIDE0441	Membrane protein of unknown function; No homology to any previously reported sequences.	Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.	0.701
NIDE0442	NIDE0438	NIDE0442	NIDE0438	Trypsin-like serine peptidase, S1C; Function of strongly homologous gene; enzyme.	Protein of unknown function; No homology to any previously reported sequences.	0.596
NIDE0442	NIDE0439	NIDE0442	NIDE0439	Trypsin-like serine peptidase, S1C; Function of strongly homologous gene; enzyme.	Membrane protein of unknown function; No homology to any previously reported sequences.	0.701
NIDE0442	gdhA	NIDE0442	NIDE0440	Trypsin-like serine peptidase, S1C; Function of strongly homologous gene; enzyme.	Glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.792
NIDE0442	lipB	NIDE0442	NIDE0441	Trypsin-like serine peptidase, S1C; Function of strongly homologous gene; enzyme.	Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.	0.791
gdhA	NIDE0438	NIDE0440	NIDE0438	Glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Protein of unknown function; No homology to any previously reported sequences.	0.613
gdhA	NIDE0439	NIDE0440	NIDE0439	Glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Membrane protein of unknown function; No homology to any previously reported sequences.	0.701
gdhA	NIDE0442	NIDE0440	NIDE0442	Glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Trypsin-like serine peptidase, S1C; Function of strongly homologous gene; enzyme.	0.792
gdhA	lipB	NIDE0440	NIDE0441	Glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.	0.816
lipB	NIDE0438	NIDE0441	NIDE0438	Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.	Protein of unknown function; No homology to any previously reported sequences.	0.611
lipB	NIDE0439	NIDE0441	NIDE0439	Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.	Membrane protein of unknown function; No homology to any previously reported sequences.	0.701
lipB	NIDE0442	NIDE0441	NIDE0442	Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.	Trypsin-like serine peptidase, S1C; Function of strongly homologous gene; enzyme.	0.791
lipB	gdhA	NIDE0441	NIDE0440	Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.	Glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.816