Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE0467Exported protein of unknown function, containing C-terminal TonB domain; No homology to any previously reported sequences. (290 aa)    
Predicted Functional Partners:
NIDE2671
Putative Vitamin B12 transporter BtuB precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
 
 0.570
exbD
Biopolymer transport protein exbD; Function of strongly homologous gene; transporter.
  
 
 0.540
exbD-2
Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.540
exbD3
Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.540
tolR
Protein TolR; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.540
NIDE0546
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.536
NIDE0547
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.536
zwf1
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
       0.475
exbB
Biopolymer transport protein exbB; Function of strongly homologous gene; transporter.
  
 
 0.447
exbB-2
Biopolymer transport protein ExbB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.447
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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