STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0482Membrane protein of unknown function; No homology to any previously reported sequences. (214 aa)    
Predicted Functional Partners:
NIDE4095
Putative Type IV pilus assembly protein PilV; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
  
 0.727
NIDE4091
Putative Type IV pilus assembly protein PilY1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
  
 0.681
NIDE4094
Putative Type IV pilus assembly protein PilW; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
  
 0.636
argD
Acetylornithine aminotransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
       0.610
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
       0.586
argH
Argininosuccinate lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.576
argG
Argininosuccinate synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.567
NIDE4099
Exported protein of unknown function; No homology to any previously reported sequences.
  
  
 0.544
NIDE0487
Protein of unknown function; No homology to any previously reported sequences.
       0.461
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.415
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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