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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0500Protein of unknown function; No homology to any previously reported sequences. (169 aa)    
Predicted Functional Partners:
NIDE0499
Homologs of previously reported genes of unknown function.
      0.928
NIDE0498
Putative DNA recombination protein RmuC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
       0.810
yibK
RNA methyltransferase TrmH, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
   
    0.545
NIDE0497
Putative Phosphoenolpyruvate synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.531
NIDE0495
Exported protein of unknown function, contains Transglycosylase SLT domain; No homology to any previously reported sequences; 14625683, 8203016.
       0.504
ttuD
Putative Hydroxypyruvate reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.504
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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