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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0517Homologs of previously reported genes of unknown function. (378 aa)    
Predicted Functional Partners:
NIDE1094
Putative ABC transporter, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
     0.940
NIDE0351
Putative Uncharacterized ABC-type transport system, permease component YbbP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.723
NIDE0518
Putative Peptidase S16, lon-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.625
NIDE0516
BNR repeat protein (fragment); Homologs of previously reported genes of unknown function; 12374200, 8591030.
       0.553
drrA
Daunorubicin resistance ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
       0.533
NIDE0515
Putative Alpha-ribazole phosphatase cobC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the phosphoglycerate mutase family.
       0.523
NIDE0520
Putative Daunorubicin resistance ABC transporter, membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.463
NIDE2591
Amine oxidase, flavin-containing; Function of strongly homologous gene; enzyme.
 
  
 0.444
crtB
Phytoene synthase; Function of strongly homologous gene; enzyme.
  
  
 0.407
NIDE4376
Conserved protein of unknown function, Patatin-like; Homologs of previously reported genes of unknown function; 3371664.
  
     0.406
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.