STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftsKDNA translocase FtsK; Function of strongly homologous gene; enzyme. (790 aa)    
Predicted Functional Partners:
parB
Chromosomal partitioning protein ParB; Function of strongly homologous gene; enzyme; Belongs to the ParB family.
  
  
 0.933
NIDE0540
Putative Outer membrane lipoprotein carrier protein LolA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
  
 0.864
NIDE4062
Aldehyde dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the aldehyde dehydrogenase family.
   
  
 0.797
fleN
Flagellar number regulator FleN; Function of homologous gene experimentally demonstrated in an other organism; regulator.
     
 0.766
pilD
Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
     
 0.743
NIDE0765
Putative Cell division protein FtsQ; Essential cell division protein.
   
 
 0.736
tadB
Pilus assembly protein TadB; Function of strongly homologous gene; transporter.
      
 0.731
NIDE2734
Putative Competence protein ComEC/Rec2 related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.718
nrdR
Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
     
 0.655
rarA
Replication-associated recombination protein A; Function of homologous gene experimentally demonstrated in an other organism; cell process.
 
  
 0.629
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.