Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE0562Putative Universal stress protein UspA (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (703 aa)    
Predicted Functional Partners:
NIDE0561
Radical SAM superfamily protein, putative Coenzyme PQQ synthesis protein E; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.846
NIDE0901
Membrane protein of unknown function, putative Cytochrome bd-type quinol oxidase subunit 1; No homology to any previously reported sequences; 2843510.
 
   
 0.789
NIDE3296
Uncharacterized protein; Homologs of previously reported genes of unknown function; 1658595, 2170336, 8626304.
 
   
 0.789
NIDE3303
Uncharacterized protein; Homologs of previously reported genes of unknown function; 1658595, 2170336, 8626304.
 
   
 0.789
NIDE0896
Uncharacterized protein; No homology to any previously reported sequences.
 
   
 0.788
NIDE0413
Protein of unknown function; No homology to any previously reported sequences.
 
     0.774
NIDE0903
Conserved protein of unknown function, putative Cytochrome c; Homologs of previously reported genes of unknown function; 3881803.
  
     0.771
NIDE3293
Putative Cytochrome c (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
  
     0.771
NIDE3278
Putative Nitrate reductase, gamma subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.741
NIDE3271
Putative Nitrate oxidoreductase, gamma subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.729
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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