Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0577Homologs of previously reported genes of unknown function. (831 aa)    
Predicted Functional Partners:
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.709
NIDE2037
Homologs of previously reported genes of unknown function.
  
     0.583
NIDE0575
Exported protein of unknown function; No homology to any previously reported sequences.
       0.515
NIDE0578
Protein of unknown function, putative Sensor histidine kinase; No homology to any previously reported sequences; 18076326.
       0.512
NIDE0579
Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
       0.512
NIDE2246
Homologs of previously reported genes of unknown function.
 
     0.463
NIDE2038
Conserved protein of unknown function, putative AAA-5 ATPase; Homologs of previously reported genes of unknown function; 9927482.
  
     0.404
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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