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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0624Protein of unknown function, containing TPR repeats; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716. (399 aa)    
Predicted Functional Partners:
NIDE1061
Conserved protein of unknown function, contains TPR repeats; Homologs of previously reported genes of unknown function.
  
     0.762
NIDE3673
Protein of unknown function, contains TPR repeats; No homology to any previously reported sequences; 15451670, 1882418, 7667876, 9482716.
 
   0.714
NIDE0308
Protein of unknown function, contains Ankyrin and Tetratricopeptide repeats; No homology to any previously reported sequences; 14659697, 7667876, 8108379, 9482716.
 
     0.682
secA
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
       0.557
NIDE0625
Exported protein of unknown function; No homology to any previously reported sequences.
       0.529
NIDE2405
Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 14659697, 15361863, 16893176, 7667876, 9482716.
 
 
 
0.528
NIDE3440
Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 15223324, 1882418, 7667876, 8722778, 9482716.
 
 
0.526
NIDE2024
Protein of unknown function, contains FHA and Transglycosylase SLT domain; No homology to any previously reported sequences; 10518219, 10843862, 11106755, 11911881, 12564991, 14625683, 7482699, 8203016.
  
  
 0.493
NIDE0282
Protein of unknown function, TPR-like; No homology to any previously reported sequences.
  
     0.486
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.477
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.