STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0637Homologs of previously reported genes of unknown function. (469 aa)    
Predicted Functional Partners:
NIDE0626
Conserved exported protein of unknown function, contains BNR repeats; Homologs of previously reported genes of unknown function; 2562507.
 
     0.663
NIDE0632
Conserved exported protein of unknown function, contains BNR repeats; Homologs of previously reported genes of unknown function; 2562507.
 
     0.663
NIDE0638
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
       0.570
NIDE0636
Protein of unknown function, contains Excisionase DNA-binding domain; No homology to any previously reported sequences; 15066428.
       0.563
NIDE4367
Putative Peptidase U62, TldE-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.550
NIDE4349
Homologs of previously reported genes of unknown function.
  
     0.517
speB
Agmatinase; Function of strongly homologous gene; enzyme; Belongs to the arginase family.
  
  
 0.500
NIDE2208
Conserved membrane protein of unknown function, putative MFS transport permease; Homologs of previously reported genes of unknown function.
  
     0.456
NIDE0635
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
       0.436
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.