Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE0638Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor. (752 aa)    
Predicted Functional Partners:
NIDE0659
TonB-dependent siderophore receptor; Function of strongly homologous gene; receptor.
  
  
 0.745
NIDE0644
TonB-dependent siderophore receptor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
     0.727
NIDE2671
Putative Vitamin B12 transporter BtuB precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   
 0.612
NIDE2008
Putative Outer membrane autotransporter precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 
 0.605
NIDE2166
Putative Protein TonB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.595
fecR
Protein FecR, ferric citrate sensor; Function of strongly homologous gene; regulator.
 
  
 0.593
fecR2
Protein FecR, ferric citrate sensor; Function of strongly homologous gene; regulator.
 
  
 0.593
NIDE3525
Putative Iron dicitrate transmembrane sensor FecR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
 
  
 0.591
NIDE2179
Putative Protein FecR, ferric citrate sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
  
 0.588
NIDE1031
Putative Protein TonB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.584
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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