STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE0641Putative TonB-dependent siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor. (744 aa)    
Predicted Functional Partners:
NIDE0648
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
  
 0.789
fecR2
Protein FecR, ferric citrate sensor; Function of strongly homologous gene; regulator.
 
 
 0.695
NIDE0645
Conserved membrane protein of unknown function, containing PepSY-associated TM helices; Homologs of previously reported genes of unknown function.
 
  
 0.688
fecR
Protein FecR, ferric citrate sensor; Function of strongly homologous gene; regulator.
 
 
 0.688
NIDE2179
Putative Protein FecR, ferric citrate sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.677
NIDE3525
Putative Iron dicitrate transmembrane sensor FecR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
 
 
 0.676
NIDE1742
Putative Multi-domain non-ribosomal peptide synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
  
 0.653
NIDE0642
Conserved membrane protein of unknown function, DUF6; Homologs of previously reported genes of unknown function.
       0.584
NIDE0662
Uncharacterized protein; Homologs of previously reported genes of unknown function; 15583150.
 
  
 0.584
NIDE1031
Putative Protein TonB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.577
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.