Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
exbBBiopolymer transport protein exbB; Function of strongly homologous gene; transporter. (141 aa)    
Predicted Functional Partners:
exbD
Biopolymer transport protein exbD; Function of strongly homologous gene; transporter.
 
 
 0.996
exbD-2
Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.982
exbD3
Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.921
tolR
Protein TolR; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.880
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
     
 0.807
NIDE0645
Conserved membrane protein of unknown function, containing PepSY-associated TM helices; Homologs of previously reported genes of unknown function.
  
    0.781
fecR
Protein FecR, ferric citrate sensor; Function of strongly homologous gene; regulator.
   
  
 0.779
NIDE0644
TonB-dependent siderophore receptor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  
 0.741
cspB
Cold shock protein modulated with ribosomal subunit interface-like protein; Function of strongly homologous gene; factor.
  
  
 0.682
NIDE0648
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
  
 0.677
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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