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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbBBiopolymer transport protein exbB; Function of strongly homologous gene; transporter. (141 aa)    
Predicted Functional Partners:
exbD
Biopolymer transport protein exbD; Function of strongly homologous gene; transporter.
 
 
 0.996
exbD-2
Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.984
exbD3
Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.916
tolR
Protein TolR; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.872
NIDE0645
Conserved membrane protein of unknown function, containing PepSY-associated TM helices; Homologs of previously reported genes of unknown function.
  
    0.784
NIDE0644
TonB-dependent siderophore receptor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  
 0.753
fecR
Protein FecR, ferric citrate sensor; Function of strongly homologous gene; regulator.
   
  
 0.711
NIDE0648
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
  
 0.690
NIDE0628
Putative TonB protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.679
NIDE2189
Putative Protein TonB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.616
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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