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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0660Conserved protein of unknown function, putative AAA+ superfamily ATPase; Homologs of previously reported genes of unknown function. (410 aa)    
Predicted Functional Partners:
NIDE1265
Conserved protein of unknown function, Fic family; Homologs of previously reported genes of unknown function.
 
     0.549
NIDE2961
Conserved protein of unknown function, Fic protein family; Homologs of previously reported genes of unknown function.
 
     0.527
NIDE1556
Putative Serine kinase HipA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.522
NIDE3382
Homologs of previously reported genes of unknown function.
  
     0.490
NIDE0661
Protein of unknown function; No homology to any previously reported sequences.
       0.444
NIDE2623
Conserved protein of unknown function, RhuM family; Homologs of previously reported genes of unknown function; 9922266.
 
     0.404
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.