Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE0677Putative Disulfide oxidoreductase dsbA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (214 aa)    
Predicted Functional Partners:
NIDE0676
Putative Outer membrane lipoprotein Slp; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
       0.631
copA
Copper-exporting ATPase; Function of strongly homologous gene; transporter.
   
 
 0.623
NIDE3882
Putative Multihaem cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
     0.471
NIDE2908
Homologs of previously reported genes of unknown function.
  
     0.467
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.453
NIDE0679
Protein of unknown function; No homology to any previously reported sequences.
       0.440
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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