Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0684Exported protein of unknown function, MCP-like; No homology to any previously reported sequences. (211 aa)    
Predicted Functional Partners:
NIDE0686
Protein of unknown function, putative Histidine kinase; No homology to any previously reported sequences.
 
 
 0.889
cheV
Chemotaxis signal transducer CheV; Function of strongly homologous gene; regulator.
  
 
 0.866
NIDE2654
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.857
NIDE0683
Homologs of previously reported genes of unknown function.
       0.782
NIDE0685
Putative General secretion pathway protein G (modular Protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
     
 0.774
NIDE0805
Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.666
NIDE0815
Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.666
NIDE0687
Response regulator with HD-GYP domain; Function of strongly homologous gene; regulator.
   
 
 0.604
cheA
Chemotaxis protein histidine kinase CheA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.580
cheA-2
Chemotaxis protein histidine kinase CheA; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
 
 0.580
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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