Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE0739Glycosyl transferase, group 1; Function of strongly homologous gene; enzyme. (403 aa)    
Predicted Functional Partners:
NIDE0740
Putative Glycosyl transferase, group 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.814
nrdR
Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
      
 0.795
NIDE0738
Glycosyl transferase, family 2; Function of strongly homologous gene; enzyme.
  
    0.733
NIDE0741
Putative Polysaccharide biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.681
NIDE0742
Protein of unknown function, putative Glycosyltransferase; No homology to any previously reported sequences.
  
    0.591
NIDE0743
Protein of unknown function; No homology to any previously reported sequences.
       0.585
recA
Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
 
 0.482
NIDE2997
Putative UDP-glucose 4-epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.462
NIDE0744
Conserved membrane protein of unknown function, putative glycosyltransferase; Homologs of previously reported genes of unknown function.
       0.439
NIDE2334
Protein of unknown function, putative Glycosyl transferase; No homology to any previously reported sequences; 9334165.
 
  
 0.434
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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