STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cstACarbon starvation protein; Function of homologous gene experimentally demonstrated in an other organism; phenotype. (668 aa)    
Predicted Functional Partners:
engD
GTP-dependent nucleic acid-binding protein EngD; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
     
 0.826
NIDE1291
ATP-dependent DNA helicase; Function of strongly homologous gene; enzyme.
      
 0.800
yajQ
Conserved protein of unknown function, nucleotide-binding protein; Homologs of previously reported genes of unknown function; 12381839; Belongs to the UPF0234 family.
       0.783
thrS
Threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
      
 0.779
NIDE0749
Protein of unknown function, contains BNR repeats; No homology to any previously reported sequences; 2562507.
  
    0.557
carB
Carbamoyl-phosphate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the CarB family.
   
  
 0.557
NIDE0746
Protein of unknown function; No homology to any previously reported sequences.
       0.547
NIDE0745
Conserved protein of unknown function, Alpha/beta hydrolase fold; Homologs of previously reported genes of unknown function.
     
 0.529
malQ
4-alpha-glucanotransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.427
ttgA
RND efflux system, membrane fusion protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  
 0.425
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.