STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0803Putative Polysaccharide deacetylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (297 aa)    
Predicted Functional Partners:
NIDE2856
Putative O-antigen polymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.787
NIDE2866
Homologs of previously reported genes of unknown function; 1644165, 8090199.
 
     0.783
NIDE3811
Homologs of previously reported genes of unknown function.
 
     0.773
NIDE3809
Homologs of previously reported genes of unknown function.
  
    0.703
NIDE2860
Homologs of previously reported genes of unknown function.
 
     0.689
NIDE2852
Putative Glycosyl transferase, group 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.669
NIDE2403
Homologs of previously reported genes of unknown function.
 
     0.655
NIDE2733
Putative Glycosyl transferase, group 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.614
NIDE0805
Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.467
NIDE2334
Protein of unknown function, putative Glycosyl transferase; No homology to any previously reported sequences; 9334165.
  
  
 0.459
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.