STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0809Homologs of previously reported genes of unknown function. (343 aa)    
Predicted Functional Partners:
NIDE0808
Protein of unknown function; No homology to any previously reported sequences.
       0.821
NIDE3296
Uncharacterized protein; Homologs of previously reported genes of unknown function; 1658595, 2170336, 8626304.
  
     0.571
NIDE3303
Uncharacterized protein; Homologs of previously reported genes of unknown function; 1658595, 2170336, 8626304.
  
     0.553
folD
Bifunctional 5,10 methylene-tetrahydrofolate dehydrogenase/cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.511
NIDE0905
Protein of unknown function, putative Cytochrome c; No homology to any previously reported sequences; 3881803.
  
     0.465
NIDE0807
Putative Histidine kinase, containing PAS domain S-box; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.444
NIDE0896
Uncharacterized protein; No homology to any previously reported sequences.
  
     0.444
NIDE1742
Putative Multi-domain non-ribosomal peptide synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.437
NIDE3313
Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences.
  
     0.432
NIDE0804
Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.429
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.