Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
NIDE0818Conserved exported protein of unknown function, putative diheme cytochrome c; Homologs of previously reported genes of unknown function. (257 aa)    
Predicted Functional Partners:
NIDE3271
Putative Nitrate oxidoreductase, gamma subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.974
NIDE3278
Putative Nitrate reductase, gamma subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.973
qcrB
Quinol-cytochrome c reductase, fused cytochrome b/c subunit; Function of strongly homologous gene; carrier.
  
 
 0.951
NIDE0903
Conserved protein of unknown function, putative Cytochrome c; Homologs of previously reported genes of unknown function; 3881803.
 
     0.923
NIDE0817
Homologs of previously reported genes of unknown function.
 
     0.894
NIDE3888
Putative Cytochrome c55X; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
 
 0.817
NIDE3879
Putative Cytochrome c (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
 
 0.816
NIDE3308
Homologs of previously reported genes of unknown function.
  
     0.772
NIDE3794
Exported protein of unknown function; No homology to any previously reported sequences.
  
     0.771
NIDE4267
Homologs of previously reported genes of unknown function.
  
     0.770
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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