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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdACytochrome c biogenesis protein CcdA; Function of strongly homologous gene; enzyme. (248 aa)    
Predicted Functional Partners:
resA2
Thiol-disulfide oxidoreductase ResA; Function of strongly homologous gene; enzyme.
  
 0.994
resA-2
Thiol-disulfide oxidoreductase ResA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.992
resA
Thiol-disulfide oxidoreductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.975
ccsA
Cytochrome c biogenesis protein CcsA (ResC-like); Function of strongly homologous gene; transporter.
 
  
 0.915
NIDE0847
Putative Cytochrome c biogenesis protein, ResB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.827
NIDE0633
Putative Thiol-disulfide oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.803
hscA
Chaperone protein HscA (Hsc66); Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the heat shock protein 70 family.
      
 0.751
modA
Molybdate ABC transporter, periplasmic binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
      
 0.742
groL
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
      
 0.709
NIDE2192
Putative Zinc transporter ZupT; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
    0.558
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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