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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0852Geranylgeranyl reductase family protein; Function of strongly homologous gene; enzyme. (402 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase; Function of strongly homologous gene; enzyme.
 
  
 0.573
ccdA
Cytochrome c biogenesis protein CcdA; Function of strongly homologous gene; enzyme.
  
    0.528
resA2
Thiol-disulfide oxidoreductase ResA; Function of strongly homologous gene; enzyme.
  
    0.510
NIDE3330
Conserved protein of unknown function, SDR family; Homologs of previously reported genes of unknown function; 7742302.
  
 
 0.507
NIDE0843
Conserved protein of unknown function, containing B12-binding and radical SAM domain; Homologs of previously reported genes of unknown function; 11222759, 14704425, 7992050.
 
  
 0.501
NIDE2334
Protein of unknown function, putative Glycosyl transferase; No homology to any previously reported sequences; 9334165.
  
  
 0.498
NIDE2591
Amine oxidase, flavin-containing; Function of strongly homologous gene; enzyme.
 
  
 0.496
NIDE2333
Conserved protein of unknown function, Fe-S oxidoreductase; Homologs of previously reported genes of unknown function; 11222759, 11882645, 14527323, 14633981, 14704425, 9242908.
 
  
 0.482
ccsA
Cytochrome c biogenesis protein CcsA (ResC-like); Function of strongly homologous gene; transporter.
       0.475
NIDE1587
Protein of unknown function, putative Sensory histidine kinase with methyltransferase region; No homology to any previously reported sequences; 11369279, 11489844, 15009198, 16176121, 16622408, 18076326, 7699720, 9301332, 9382818.
     
 0.475
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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