STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
NIDE0852Geranylgeranyl reductase family protein; Function of strongly homologous gene; enzyme. (402 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase; Function of strongly homologous gene; enzyme.
 
  
 0.562
ccdA
Cytochrome c biogenesis protein CcdA; Function of strongly homologous gene; enzyme.
  
    0.524
resA2
Thiol-disulfide oxidoreductase ResA; Function of strongly homologous gene; enzyme.
  
    0.519
NIDE2591
Amine oxidase, flavin-containing; Function of strongly homologous gene; enzyme.
 
  
 0.511
NIDE0843
Conserved protein of unknown function, containing B12-binding and radical SAM domain; Homologs of previously reported genes of unknown function; 11222759, 14704425, 7992050.
 
  
 0.498
NIDE1185
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.488
NIDE1742
Putative Multi-domain non-ribosomal peptide synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.487
NIDE2333
Conserved protein of unknown function, Fe-S oxidoreductase; Homologs of previously reported genes of unknown function; 11222759, 11882645, 14527323, 14633981, 14704425, 9242908.
 
  
 0.479
ccsA
Cytochrome c biogenesis protein CcsA (ResC-like); Function of strongly homologous gene; transporter.
       0.476
resA-2
Thiol-disulfide oxidoreductase ResA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.458
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.