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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0853Protein of unknown function, TPR-like; No homology to any previously reported sequences. (306 aa)    
Predicted Functional Partners:
NIDE3044
Putative Outer membrane protein assembly factor YaeT precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
 
 0.924
NIDE0867
Putative Surface antigen D15; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
 
 0.831
NIDE1129
Homologs of previously reported genes of unknown function; 9724625.
   
 
 0.829
NIDE2940
Homologs of previously reported genes of unknown function.
   
 
 0.829
NIDE1580
Conserved exported protein of unknown function, putative LPS-assembly protein Imp; Homologs of previously reported genes of unknown function; 12724388, 16861298, 2547691, 7811102.
 
  
 0.712
tolB
Protein TolB precursor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
   
 0.665
NIDE2063
Homologs of previously reported genes of unknown function.
   
 
 0.642
NIDE2494
Protein of unknown function; No homology to any previously reported sequences.
   
 
 0.642
lolC
Lipoprotein-releasing system, transmembrane protein LolC; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
   
 0.602
fabH-2
3-ketoacyl-(acyl carrier protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
       0.587
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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