Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE0868Homologs of previously reported genes of unknown function. (342 aa)    
Predicted Functional Partners:
NIDE0867
Putative Surface antigen D15; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
   
 
 0.863
NIDE0866
Putative ABC transporter, auxiliary component, putative ATP-dependent toluene efflux transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.658
yrbD
ABC transporter, periplasmic binding component, putative ATP-dependent toluene efflux transporter; Function of strongly homologous gene; transporter.
       0.468
yrbF
ABC transporter, ATPase component, putative ATP-dependent toluene efflux transporter; Function of strongly homologous gene; enzyme.
  
    0.459
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.453
NIDE3044
Putative Outer membrane protein assembly factor YaeT precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
    
 
 0.422
fbp
Peptidyl-prolyl cis-trans isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 
 0.409
fkpA
Peptidylprolyl isomerase, FKBP-type; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 
 0.409
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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