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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0890Putative Lipopolysaccharide biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (408 aa)    
Predicted Functional Partners:
NIDE0889
Putative Polysaccharide export protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.966
NIDE0507
ABC-2 type transporter, permease component, putative LPS export system; Function of strongly homologous gene; transporter.
  
  
 0.746
NIDE2892
Putative O-antigen export system, permease protein RfbA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.746
wzm
ABC-type polysaccharide transport system, permease component; Function of strongly homologous gene; transporter.
  
  
 0.746
NIDE2681
Conserved protein of unknown function, putative Polysaccharide export protein; Homologs of previously reported genes of unknown function.
 
  
 0.745
NIDE0888
Homologs of previously reported genes of unknown function.
 
     0.743
NIDE2680
Protein of unknown function, putative Polysaccharide export protein; No homology to any previously reported sequences.
 
  
 0.740
NIDE0508
ABC-type transport system, ATPase component, putative LPS export system; Function of strongly homologous gene; enzyme.
  
  
 0.737
rfbB
O-antigen export system, ATP-binding protein RfbB (modular protein); Function of strongly homologous gene; transporter.
  
  
 0.737
rfbB2
O-antigen export system, ATP-binding protein RfbB (modular protein); Function of strongly homologous gene; transporter.
  
  
 0.737
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.