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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0896Uncharacterized protein; No homology to any previously reported sequences. (567 aa)    
Predicted Functional Partners:
cydB
Cytochrome bd oxidase, subunit II; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.949
NIDE0903
Conserved protein of unknown function, putative Cytochrome c; Homologs of previously reported genes of unknown function; 3881803.
 
     0.867
NIDE0905
Protein of unknown function, putative Cytochrome c; No homology to any previously reported sequences; 3881803.
 
   
 0.823
NIDE0562
Putative Universal stress protein UspA (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
   
 0.797
NIDE0898
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
   
 0.793
NIDE0901
Membrane protein of unknown function, putative Cytochrome bd-type quinol oxidase subunit 1; No homology to any previously reported sequences; 2843510.
 
  
 
0.793
NIDE3293
Putative Cytochrome c (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
  
     0.772
NIDE0899
Putative Quinol-cytochrome c reductase, cytochrome b subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
   
 0.765
NIDE0413
Protein of unknown function; No homology to any previously reported sequences.
 
     0.761
NIDE3308
Homologs of previously reported genes of unknown function.
  
     0.741
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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