STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0912Transposase, IS3 family; Function of strongly homologous gene; enzyme. (88 aa)    
Predicted Functional Partners:
NIDE0914
Transposase (C-terminal fragment); Function of strongly homologous gene; enzyme.
     0.926
NIDE0913
Transposase (N-terminal fragment); Function of strongly homologous gene; enzyme.
 
     0.921
NIDE2133
Transposase; Function of strongly homologous gene; extrachromosomal origin.
 
     0.756
NIDE3762
Transposase; Function of strongly homologous gene; extrachromosomal origin.
     0.754
NIDE2705
Transposase (fragment); Function of strongly homologous gene; extrachromosomal origin.
  
     0.675
NIDE2706
Transposase (fragment); Function of strongly homologous gene; enzyme.
 
     0.634
NIDE1613
Transposase (N-terminal fragment); Function of strongly homologous gene; enzyme.
  
     0.603
NIDE0910
Exported protein of unknown function; No homology to any previously reported sequences.
       0.405
NIDE0911
Exported protein of unknown function; No homology to any previously reported sequences; 7845208, 8439290.
       0.405
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.