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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0925Conserved protein of unknown function, putative Protein kinase; Homologs of previously reported genes of unknown function. (883 aa)    
Predicted Functional Partners:
NIDE0926
Putative Dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.775
NIDE0923
Protein of unknown function; No homology to any previously reported sequences.
 
     0.746
NIDE3856
Homologs of previously reported genes of unknown function.
  
     0.700
NIDE0924
Protein of unknown function; No homology to any previously reported sequences.
       0.682
NIDE3677
Homologs of previously reported genes of unknown function.
  
     0.618
NIDE2024
Protein of unknown function, contains FHA and Transglycosylase SLT domain; No homology to any previously reported sequences; 10518219, 10843862, 11106755, 11911881, 12564991, 14625683, 7482699, 8203016.
  
 
 0.553
tauD
Taurine dioxygenase, 2-oxoglutarate-dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.519
NIDE1528
Conserved protein of unknown function, contains FHA domain; Homologs of previously reported genes of unknown function; 11106755, 11911881, 12564991, 7482699.
   
 
 0.501
NIDE0686
Protein of unknown function, putative Histidine kinase; No homology to any previously reported sequences.
   
 
 0.490
NIDE0805
Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.446
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.