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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0956Conserved protein of unknown function, putative proteasome component; Homologs of previously reported genes of unknown function; 7583123, 9765579. (506 aa)    
Predicted Functional Partners:
NIDE0955
Uncharacterized ATPase, AAA family; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.
  
 0.960
NIDE0958
Putative Proteasome, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.910
NIDE0959
Putative Proteasome, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.896
pan
Proteasome-associated ATPase; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.
  
 0.820
ubact
Protein of unknown function; May function as a protein modifier covalently attached to lysine residues of substrate proteins. This may serve to target the modified proteins for degradation by proteasomes.
       0.817
NIDE3265
Homologs of previously reported genes of unknown function.
 
  
 0.794
psmA
Proteasome, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.791
psmB
Proteasome, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.787
NIDE0960
Conserved protein of unknown function, putative proteasome component; Homologs of previously reported genes of unknown function; 7583123, 9254018, 9765579.
 
    
0.601
NIDE0953
Conserved protein of unknown function, UPF0047; Homologs of previously reported genes of unknown function.
       0.533
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.