STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubactProtein of unknown function; May function as a protein modifier covalently attached to lysine residues of substrate proteins. This may serve to target the modified proteins for degradation by proteasomes. (64 aa)    
Predicted Functional Partners:
NIDE0956
Conserved protein of unknown function, putative proteasome component; Homologs of previously reported genes of unknown function; 7583123, 9765579.
       0.816
NIDE0955
Uncharacterized ATPase, AAA family; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.
       0.785
ddlB
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
      
 0.740
NIDE0958
Putative Proteasome, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.565
NIDE0953
Conserved protein of unknown function, UPF0047; Homologs of previously reported genes of unknown function.
       0.529
NIDE0954
Peptidase S1C, HtrA family; Function of strongly homologous gene; enzyme.
       0.529
NIDE0952
Protein of unknown function; No homology to any previously reported sequences.
       0.518
NIDE0959
Putative Proteasome, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.507
NIDE0960
Conserved protein of unknown function, putative proteasome component; Homologs of previously reported genes of unknown function; 7583123, 9254018, 9765579.
       0.507
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.